Detailed information of SNP:
|
SNP ID:
sf0605414220(Gbrowse)
Chromosome: chr06 Position: 5414220 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1182 | 79.53% | 20.47% |
| All Indica | 643 | 73.87% | 26.13% |
| All Japonica | 429 | 88.34% | 11.66% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 311 | 53.38% | 46.62% |
| Indica II | 168 | 96.43% | 3.57% |
| Indica Intermediate | 164 | 89.63% | 10.37% |
| Temperate Japonica | 306 | 97.71% | 2.29% |
| Tropical Japonica | 71 | 56.34% | 43.66% |
| Japonica Intermediate | 52 | 76.92% | 23.08% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 33 | 69.70% | 30.30% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605414220 | C->T | INTERGENIC | None |