Detailed information of SNP:
|
SNP ID:
sf0605436556(Gbrowse)
Chromosome: chr06 Position: 5436556 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 92.37% | 7.63% |
| All Indica | 796 | 87.44% | 12.56% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 77.54% | 22.46% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605436556 | A->C | INTERGENIC | None |