Detailed information of SNP:
|
SNP ID:
sf0605439936(Gbrowse)
Chromosome: chr06 Position: 5439936 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.26% | 8.74% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605439936 | T->A | LOC_Os06g10550(LOC_Os06g10550.1) | Synonymous |