Detailed information of SNP:
|
SNP ID:
sf0605442273(Gbrowse)
Chromosome: chr06 Position: 5442273 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1267 | 92.34% | 7.66% |
| All Indica | 672 | 85.57% | 14.43% |
| All Japonica | 478 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 314 | 85.35% | 14.65% |
| Indica II | 172 | 91.86% | 8.14% |
| Indica Intermediate | 186 | 80.11% | 19.89% |
| Temperate Japonica | 325 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605442273 | C->T | INTERGENIC | None |