Detailed information of SNP:
|
SNP ID:
sf0605506889(Gbrowse)
Chromosome: chr06 Position: 5506889 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1329 | 75.40% | 24.60% |
| All Indica | 791 | 97.35% | 2.65% |
| All Japonica | 420 | 45.00% | 55.00% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 278 | 56.47% | 43.53% |
| Tropical Japonica | 88 | 19.32% | 80.68% |
| Japonica Intermediate | 54 | 27.78% | 72.22% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605506889 | C->T | INTERGENIC | None |