Detailed information of SNP:



SNP ID: sf0605514625(Gbrowse)

Chromosome: chr06

Position: 5514625
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1403 95.58% 4.42%
All Indica799 99.87% 0.13%
All Japonica481 88.36% 11.64%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica80 41.25% 58.75%
Japonica Intermediate66 86.36% 13.64%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0605514625 C->T INTERGENIC None