Detailed information of SNP:
|
SNP ID:
sf0605537061(Gbrowse)
Chromosome: chr06 Position: 5537061 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 91.12% | 8.88% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 486 | 84.36% | 15.64% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 326 | 98.77% | 1.23% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605537061 | A->G | INTERGENIC | None |