Detailed information of SNP:
|
SNP ID:
sf0605537243(Gbrowse)
Chromosome: chr06 Position: 5537243 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 90.43% | 9.57% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 488 | 84.02% | 15.98% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 329 | 97.87% | 2.13% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605537243 | A->G | INTERGENIC | None |