Detailed information of SNP:
|
SNP ID:
sf0605602221(Gbrowse)
Chromosome: chr06 Position: 5602221 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 64.14% | 35.86% |
| All Indica | 797 | 69.39% | 30.61% |
| All Japonica | 494 | 66.19% | 33.81% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 209 | 67.46% | 32.54% |
| Temperate Japonica | 334 | 84.43% | 15.57% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605602221 | T->G | LOC_Os06g10730(LOC_Os06g10730.1) | INTRON |