Detailed information of SNP:
|
SNP ID:
sf0605612231(Gbrowse)
Chromosome: chr06 Position: 5612231 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1343 | 95.98% | 4.02% |
| All Indica | 785 | 99.87% | 0.13% |
| All Japonica | 441 | 91.16% | 8.84% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 366 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 87.33% | 12.67% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605612231 | A->G | INTERGENIC | None |