Detailed information of SNP:
|
SNP ID:
sf0605616451(Gbrowse)
Chromosome: chr06 Position: 5616451 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.42% | 46.58% |
| All Indica | 797 | 79.55% | 20.45% |
| All Japonica | 497 | 13.08% | 86.92% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 373 | 64.88% | 35.12% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605616451 | A->C | INTERGENIC | None |