Detailed information of SNP:
|
SNP ID:
sf0605673709(Gbrowse)
Chromosome: chr06 Position: 5673709 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.05% | 47.95% |
| All Indica | 796 | 78.39% | 21.61% |
| All Japonica | 497 | 12.47% | 87.53% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 62.83% | 37.17% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605673709 | G->A | INTERGENIC | None |