Detailed information of SNP:
|
SNP ID:
sf0605681285(Gbrowse)
Chromosome: chr06 Position: 5681285 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 53.41% | 46.59% |
| All Indica | 798 | 79.45% | 20.55% |
| All Japonica | 495 | 12.53% | 87.47% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 7 | 42.86% | 57.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605681285 | G->A | INTERGENIC | None |