Detailed information of SNP:
|
SNP ID:
sf0605701165(Gbrowse)
Chromosome: chr06 Position: 5701165 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 93.42% | 6.58% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 463 | 85.31% | 14.69% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 87.95% | 12.05% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605701165 | T->C | LOC_Os06g10910(LOC_Os06g10910.1) | INTRON |