Detailed information of SNP:
|
SNP ID:
sf0605722672(Gbrowse)
Chromosome: chr06 Position: 5722672 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 63.17% | 36.83% |
| All Indica | 777 | 35.26% | 64.74% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 363 | 24.79% | 75.21% |
| Indica II | 208 | 59.13% | 40.87% |
| Indica Intermediate | 206 | 29.61% | 70.39% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605722672 | T->A | LOC_Os06g10960(LOC_Os06g10960.1) | INTRON |