Detailed information of SNP:
|
SNP ID:
sf0605856549(Gbrowse)
Chromosome: chr06 Position: 5856549 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.43% | 26.57% |
| All Indica | 799 | 74.84% | 25.16% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605856549 | A->C | LOC_Os06g11170(LOC_Os06g11170.1) | UTR_3_PRIME |
| sf0605856549 | A->C | LOC_Os06g11170(LOC_Os06g11170.2) | UTR_3_PRIME |