Detailed information of SNP:
|
SNP ID:
sf0605864871(Gbrowse)
Chromosome: chr06 Position: 5864871 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 74.49% | 25.51% |
| All Indica | 799 | 75.09% | 24.91% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605864871 | G->A | LOC_Os06g11180(LOC_Os06g11180.1) | Synonymous |