Detailed information of SNP:
|
SNP ID:
sf0605891047(Gbrowse)
Chromosome: chr06 Position: 5891047 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.80% | 27.20% |
| All Indica | 799 | 73.97% | 26.03% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605891047 | T->C | LOC_Os06g11220(LOC_Os06g11220.1) | Synonymous |