Detailed information of SNP:
|
SNP ID:
sf0605915373(Gbrowse)
Chromosome: chr06 Position: 5915373 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 78.50% | 21.50% |
| All Indica | 797 | 79.80% | 20.20% |
| All Japonica | 495 | 87.68% | 12.32% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 212 | 58.02% | 41.98% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 47.83% | 52.17% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605915373 | T->G | INTERGENIC | None |