Detailed information of SNP:



SNP ID: sf0605963535(Gbrowse)

Chromosome: chr06

Position: 5963535
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1313 82.41% 17.59%
All Indica786 98.35% 1.65%
All Japonica406 47.29% 52.71%
Aus67 100.00% 0.00%
Indica I372 98.12% 1.88%
Indica II212 99.53% 0.47%
Indica Intermediate202 97.52% 2.48%
Temperate Japonica262 33.59% 66.41%
Tropical Japonica90 78.89% 21.11%
Japonica Intermediate54 61.11% 38.89%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 90.00% 10.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0605963535 T->C INTERGENIC None