Detailed information of SNP:
|
SNP ID:
sf0605963535(Gbrowse)
Chromosome: chr06 Position: 5963535 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 82.41% | 17.59% |
| All Indica | 786 | 98.35% | 1.65% |
| All Japonica | 406 | 47.29% | 52.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 202 | 97.52% | 2.48% |
| Temperate Japonica | 262 | 33.59% | 66.41% |
| Tropical Japonica | 90 | 78.89% | 21.11% |
| Japonica Intermediate | 54 | 61.11% | 38.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605963535 | T->C | INTERGENIC | None |