Detailed information of SNP:
|
SNP ID:
sf0605982030(Gbrowse)
Chromosome: chr06 Position: 5982030 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 97.51% | 2.49% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 445 | 94.61% | 5.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 295 | 92.88% | 7.12% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605982030 | G->A | LOC_Os06g11380(LOC_Os06g11380.1) | Synonymous |