Detailed information of SNP:
|
SNP ID:
sf0606015573(Gbrowse)
Chromosome: chr06 Position: 6015573 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1344 | 79.99% | 20.01% |
| All Indica | 728 | 85.03% | 14.97% |
| All Japonica | 496 | 84.07% | 15.93% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 358 | 93.85% | 6.15% |
| Indica II | 173 | 60.69% | 39.31% |
| Indica Intermediate | 197 | 90.36% | 9.64% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606015573 | G->C | INTERGENIC | None |