Detailed information of SNP:
|
SNP ID:
sf0606108336(Gbrowse)
Chromosome: chr06 Position: 6108336 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 93.14% | 6.86% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 451 | 95.79% | 4.21% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 58 | 72.41% | 27.59% |
| Japonica Intermediate | 59 | 96.61% | 3.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606108336 | G->A | INTERGENIC | None |