Detailed information of SNP:
|
SNP ID:
sf0606119699(Gbrowse)
Chromosome: chr06 Position: 6119699 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 98.21% | 1.79% |
| All Indica | 781 | 97.44% | 2.56% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 203 | 98.03% | 1.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606119699 | T->A | INTERGENIC | None |