Detailed information of SNP:
|
SNP ID:
sf0606256200(Gbrowse)
Chromosome: chr06 Position: 6256200 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.40% | 18.60% |
| All Indica | 799 | 75.97% | 24.03% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606256200 | G->A | INTERGENIC | None |