Detailed information of SNP:
|
SNP ID:
sf0606256602(Gbrowse)
Chromosome: chr06 Position: 6256602 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.87% | 45.13% |
| All Indica | 799 | 77.97% | 22.03% |
| All Japonica | 496 | 12.50% | 87.50% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606256602 | A->C | INTERGENIC | None |