Detailed information of SNP:
|
SNP ID:
sf0606306456(Gbrowse)
Chromosome: chr06 Position: 6306456 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.94% | 42.06% |
| All Indica | 799 | 43.18% | 56.82% |
| All Japonica | 496 | 88.31% | 11.69% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 375 | 41.60% | 58.40% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 47.31% | 52.69% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606306456 | G->A | INTERGENIC | None |