Detailed information of SNP:
|
SNP ID:
sf0606306779(Gbrowse)
Chromosome: chr06 Position: 6306779 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.59% | 43.41% |
| All Indica | 799 | 78.35% | 21.65% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 68.80% | 31.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606306779 | T->C | INTERGENIC | None |