Detailed information of SNP:
|
SNP ID:
sf0606309478(Gbrowse)
Chromosome: chr06 Position: 6309478 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 95.75% | 4.25% |
| All Indica | 782 | 93.61% | 6.39% |
| All Japonica | 461 | 99.78% | 0.22% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 65 | 98.46% | 1.54% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606309478 | G->C | INTERGENIC | None |