Detailed information of SNP:
|
SNP ID:
sf0606310326(Gbrowse)
Chromosome: chr06 Position: 6310326 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 56.31% | 43.69% |
| All Indica | 799 | 78.22% | 21.78% |
| All Japonica | 489 | 13.09% | 86.91% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 68.53% | 31.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 328 | 1.22% | 98.78% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606310326 | A->C | INTERGENIC | None |