Detailed information of SNP:
|
SNP ID:
sf0606312145(Gbrowse)
Chromosome: chr06 Position: 6312145 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 51.47% | 48.53% |
| All Indica | 797 | 76.16% | 23.84% |
| All Japonica | 447 | 1.57% | 98.43% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 51 | 9.80% | 90.20% |
| Japonica Intermediate | 62 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606312145 | T->A | INTERGENIC | None |