Detailed information of SNP:



SNP ID: sf0606314831(Gbrowse)

Chromosome: chr06

Position: 6314831
Major allele: A

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1407 53.80% 46.20%
All Indica788 75.13% 24.87%
All Japonica497 12.68% 87.32%
Aus66 95.45% 4.55%
Indica I372 65.86% 34.14%
Indica II209 89.95% 10.05%
Indica Intermediate207 76.81% 23.19%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 55.32% 44.68%
Japonica Intermediate68 11.76% 88.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0606314831 T->A INTERGENIC None