Detailed information of SNP:
SNP ID:
sf0606314831(Gbrowse)
Chromosome: chr06 Position: 6314831 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1407 | 53.80% | 46.20% |
All Indica | 788 | 75.13% | 24.87% |
All Japonica | 497 | 12.68% | 87.32% |
Aus | 66 | 95.45% | 4.55% |
Indica I | 372 | 65.86% | 34.14% |
Indica II | 209 | 89.95% | 10.05% |
Indica Intermediate | 207 | 76.81% | 23.19% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 55.32% | 44.68% |
Japonica Intermediate | 68 | 11.76% | 88.24% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0606314831 | T->A | INTERGENIC | None |