Detailed information of SNP:
|
SNP ID:
sf0606377731(Gbrowse)
Chromosome: chr06 Position: 6377731 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 51.62% | 48.38% |
| All Indica | 797 | 78.80% | 21.20% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 69.44% | 30.56% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606377731 | G->A | INTERGENIC | None |