Detailed information of SNP:
|
SNP ID:
sf0606528257(Gbrowse)
Chromosome: chr06 Position: 6528257 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1164 | 91.41% | 8.59% |
| All Indica | 704 | 85.80% | 14.20% |
| All Japonica | 345 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 337 | 77.15% | 22.85% |
| Indica II | 177 | 98.31% | 1.69% |
| Indica Intermediate | 190 | 89.47% | 10.53% |
| Temperate Japonica | 239 | 100.00% | 0.00% |
| Tropical Japonica | 55 | 100.00% | 0.00% |
| Japonica Intermediate | 51 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606528257 | C->A | INTERGENIC | None |