Detailed information of SNP:
|
SNP ID:
sf0606532312(Gbrowse)
Chromosome: chr06 Position: 6532312 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 82.59% | 17.41% |
| All Indica | 793 | 81.72% | 18.28% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 211 | 59.72% | 40.28% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606532312 | G->A | INTERGENIC | None |