Detailed information of SNP:
|
SNP ID:
sf0606539227(Gbrowse)
Chromosome: chr06 Position: 6539227 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1284 | 93.46% | 6.54% |
| All Indica | 750 | 99.87% | 0.13% |
| All Japonica | 413 | 79.90% | 20.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 99.72% | 0.28% |
| Indica II | 193 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 278 | 72.66% | 27.34% |
| Tropical Japonica | 80 | 96.25% | 3.75% |
| Japonica Intermediate | 55 | 92.73% | 7.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606539227 | G->A | INTERGENIC | None |