Detailed information of SNP:
|
SNP ID:
sf0606712554(Gbrowse)
Chromosome: chr06 Position: 6712554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.75% | 19.25% |
| All Indica | 798 | 74.94% | 25.06% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606712554 | G->A | INTERGENIC | None |