Detailed information of SNP:
|
SNP ID:
sf0606948719(Gbrowse)
Chromosome: chr06 Position: 6948719 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 95.80% | 4.20% |
| All Indica | 789 | 100.00% | 0.00% |
| All Japonica | 420 | 86.90% | 13.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 279 | 81.36% | 18.64% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606948719 | C->T | INTERGENIC | None |