Detailed information of SNP:
|
SNP ID:
sf0606971702(Gbrowse)
Chromosome: chr06 Position: 6971702 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.34% | 14.66% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606971702 | C->T | INTERGENIC | None |