Detailed information of SNP:
|
SNP ID:
sf0606973114(Gbrowse)
Chromosome: chr06 Position: 6973114 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.48% | 37.52% |
| All Indica | 798 | 46.49% | 53.51% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 40.64% | 59.36% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0606973114 | A->G | INTERGENIC | None |