Detailed information of SNP:
|
SNP ID:
sf0607024049(Gbrowse)
Chromosome: chr06 Position: 7024049 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 81.00% | 19.00% |
| All Indica | 798 | 75.19% | 24.81% |
| All Japonica | 495 | 89.70% | 10.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 74.33% | 25.67% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 53.26% | 46.74% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607024049 | T->A | INTERGENIC | None |