Detailed information of SNP:
|
SNP ID:
sf0607024834(Gbrowse)
Chromosome: chr06 Position: 7024834 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.75% | 34.25% |
| All Indica | 799 | 58.07% | 41.93% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 42.67% | 57.33% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607024834 | T->C | LOC_Os06g12840(LOC_Os06g12840.1) | Non-Synonymous SNP |