Detailed information of SNP:
|
SNP ID:
sf0607145333(Gbrowse)
Chromosome: chr06 Position: 7145333 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 67.52% | 32.48% |
| All Indica | 786 | 43.64% | 56.36% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 48.09% | 51.91% |
| Indica II | 212 | 24.53% | 75.47% |
| Indica Intermediate | 208 | 55.29% | 44.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607145333 | C->T | INTERGENIC | None |