Detailed information of SNP:
|
SNP ID:
sf0607151343(Gbrowse)
Chromosome: chr06 Position: 7151343 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 72.17% | 27.83% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 32.84% | 67.16% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607151343 | C->T | LOC_Os06g13050(LOC_Os06g13050.1) | INTRON |