Detailed information of SNP:
|
SNP ID:
sf0607159299(Gbrowse)
Chromosome: chr06 Position: 7159299 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.99% | 41.01% |
| All Indica | 799 | 30.91% | 69.09% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 34.67% | 65.33% |
| Indica II | 213 | 9.86% | 90.14% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607159299 | T->C | LOC_Os06g13060(LOC_Os06g13060.1) | UTR_3_PRIME |