Detailed information of SNP:
|
SNP ID:
sf0607314412(Gbrowse)
Chromosome: chr06 Position: 7314412 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.74% | 41.26% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607314412 | T->C | LOC_Os06g13300(LOC_Os06g13300.1) | INTRON |
| sf0607314412 | T->C | LOC_Os06g13300(LOC_Os06g13300.1) | SNPs that disrupt splice sites |