Detailed information of SNP:
|
SNP ID:
sf0607337127(Gbrowse)
Chromosome: chr06 Position: 7337127 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 85.84% | 14.16% |
| All Indica | 729 | 74.21% | 25.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 339 | 75.22% | 24.78% |
| Indica II | 194 | 74.74% | 25.26% |
| Indica Intermediate | 196 | 71.94% | 28.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607337127 | C->T | LOC_Os06g13340(LOC_Os06g13340.1) | Synonymous |