Detailed information of SNP:
|
SNP ID:
sf0607345886(Gbrowse)
Chromosome: chr06 Position: 7345886 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 50.79% | 49.21% |
| All Indica | 795 | 16.60% | 83.40% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 58 | 98.28% | 1.72% |
| Indica I | 374 | 18.18% | 81.82% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 208 | 19.71% | 80.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 4 | 25.00% | 75.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607345886 | G->A | LOC_Os06g13360(LOC_Os06g13360.1) | INTRON |