Detailed information of SNP:
|
SNP ID:
sf0607373249(Gbrowse)
Chromosome: chr06 Position: 7373249 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 96.69% | 3.31% |
| All Indica | 771 | 94.29% | 5.71% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 91.76% | 8.24% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607373249 | T->C | INTERGENIC | None |