Detailed information of SNP:
|
SNP ID:
sf0607376850(Gbrowse)
Chromosome: chr06 Position: 7376850 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.13% | 39.87% |
| All Indica | 798 | 33.83% | 66.17% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 374 | 35.56% | 64.44% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607376850 | T->C | INTERGENIC | None |